PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca19387.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GATA
Protein Properties Length: 258aa    MW: 28959.9 Da    PI: 8.4117
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca19387.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.91.2e-17145177133
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                 C++C + kTp+WR+gp g ktLCnaCGl y+k 
  Dca19387.1 145 CVHCDSAKTPQWRNGPMGRKTLCNACGLQYKKG 177
                 *******************************96 PP

2GATA56.53.8e-18199231133
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                 C++C + +Tp+WR gp g+ktLCnaCG+ y+k+
  Dca19387.1 199 CVHCESASTPQWRDGPLGPKTLCNACGIQYKKR 231
                 *******************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.3E-15139189IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.899139175IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-13140178No hitNo description
Gene3DG3DSA:3.30.50.104.4E-15144177IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.32E-13144199No hitNo description
PROSITE patternPS003440145170IPR000679Zinc finger, GATA-type
PfamPF003202.9E-15145177IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-13191236No hitNo description
SMARTSM004012.2E-14193243IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.543197229IPR000679Zinc finger, GATA-type
CDDcd002023.28E-12198249No hitNo description
Gene3DG3DSA:3.30.50.101.8E-14198231IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.2E-16199231IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDSPEKKHEK LPIDLNKSGE EVNMEIVNQY GQLMGDFSKL DDELWLAPPA HDESLGFCSE  60
GLEWKIVSSH PHERTTEQEN NSVNDEGIVS MENNSSSKDS SQNCSSSVSP VSILRGRLVK  120
TRKIADLLQL NPMEKNPPAK LVKKCVHCDS AKTPQWRNGP MGRKTLCNAC GLQYKKGLLS  180
DYHRPLQTIK PQTEVIKKCV HCESASTPQW RDGPLGPKTL CNACGIQYKK RLLSPDYRPI  240
RNPRRNTSPP LEPEKNSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.29e-18GATA transcription factor 11